Journal Publications
1. Miranda et al., Manuscript in preparation
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2. Miranda Molina, Lindsey E. Way, Zhongqin Ren, Qin Liao, Bianca Guerra, Brandon Shields, Xindan Wang, HyeongJun Kim. "A framework to validate fluorescently labeled DNA-binding proteins for single-molecule experiments" Cell Reports Methods 3: 100614 (2023) (Full text - Open Access)
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** Featured in a preview by Raquel Merino Urteaga and Taekjip Ha: "Mind your tag in single-molecule measurements" Cell Reports Methods 3: 100623 (2023) (Full text - Open Access)
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3. Nicole Falci Finardi, HyeongJun Kim, Lee Hernandez, Matthew Russell, Catherine Ho, Vattipally Sreenu, Hannah Wenham, Andy Merritt, Blair L Strang. "Identification and characterization of bisbenzimide compounds that inhibit human cytomegalovirus replication" Journal of General Virology 102:001702 (2021) (PDF)
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4. HyeongJun Kim*, Linda Yen*, Somsakul P. Wongpalee, Jessica A. Kirshner, Nicita Mehta, Yan Xue, Jonathan B. Johnston, Alma L. Burlingame, John K. Kim, Joseph J. Loparo, and Steve E. Jacobsen. "The gene-silencing protein MORC-1 topologically entraps DNA and forms multimeric assemblies to cause DNA compaction." Molecular Cell 75: 700-710 (2019). (PDF)
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5. Santosh K. Gupta, Maya Abdou, Partha S. Ghosh, Jose P. Zuniga, Ezhilarasan Manoharan, HyeongJun Kim, and Yuanbing Mao. "On comparison of luminescence properties of La2Zr2O7 and La2Hf2O7 nanoparticles" The Journal of American Ceramic Society (2019). - Accepted. PDF file will be available soon.
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6. HyeongJun Kim and Joseph J. Loparo. “Multistep assembly of DNA condensation clusters by SMC” Nature Communications 7: doi:10.1038/ncomms10200 (2016). (PDF)
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7. Murat Baday, Aaron Cravens, Alex Hastie, HyeongJun Kim, Deren E. Kudeki, Pui-Yan Kwok, Ming Xiao and Paul R. Selvin. "Multicolor super-resolution DNA imaging for genetic analysis” Nano Letters 12: 3861-3866 (2012). (PDF)
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8. Yanxin Liu, Jen Hsin, HyeongJun Kim, Paul R. Selvin, Klaus Schulten. “Extension of a three-helix bundle domain of myosin VI and key role of calmodulins” Biophysical Journal 100:2964-2973 (2011). (PDF)
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9. HyeongJun Kim*, Jen Hsin*, Yanxin Liu*, Paul R. Selvin, Klaus Schulten. "Formation of salt bridges mediates internal dimerization of Myosin VI medial tail domain." Structure 18: 1443-1449 (2010). (*: Equal contribution) (PDF)
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10. Monalisa Mukherjea*, Paola Llinas*, HyeongJun Kim*, Mirko Travaglia, Dan Safer, Alan B. Zong, Julie Ménétrey, Clara Franzini-Armstrong, Paul R. Selvin, Anne Houdusse and H. Lee Sweeney. "Myosin VI dimerization triggers an unfolding of a 3-helix bundle in order to extend its reach” Molecular Cell 35: 305-315 (2009). (*: Equal contribution) (PDF)
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11. Jeff G. Reifenberger, Erdal Toprak, HyeongJun Kim, Dan Safer, H. Lee Sweeney, and Paul R. Selvin. "Myosin VI undergoes a 180° Power stroke implying an uncoupling of the front lever arm.” Proceedings of National Academy of Sciences 106:18255-18260 (2009). (PDF)
Book chapters
1. HyeongJun Kim# and Paul R. Selvin. "Fluorescence Imaging with one nano-meter accuracy (FIONA)” Encyclopedia of Biophysics (2nd edition). Springer. DOI: https://doi.org/10.1007/978-3-642-35943-9_511-1 (2018). (#: Corresponding author)
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2. HyeongJun Kim and Joseph J. Loparo. “Observing bacterial chromatin protein-DNA interactions by flow-stretching with single-molecule imaging” Bacterial Chromatin - Methods in Molecular Biology. Humana Press (Springer). 277-299 (2018).
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3. HyeongJun Kim and Paul R. Selvin. "Fluorescence imaging with one nano-meter accuracy (FIONA)” Encyclopedia of Biophysics (1st edition). Springer. 803-809 (2013).